Reconstruction of Causal Networks for Data with Random Genetic Effects (pcgen)
Implements the pcgen algorithm, which is a modified version of the standard pc-algorithm, with specific conditional independence tests and modified ori …

Reproducible Research with a Table of R Codes (rrtable)
Makes documents containing plots and tables from a table of R codes. Can make ‘HTML’, ‘pdf(‘LaTex’)’, ‘docx(‘MS Word’)’ and ‘pptx(‘MS powerpoint’)’ doc …

Miscellaneous Functions Used at ‘Numeract LLC’ (Nmisc)
Contains functions useful for debugging, set operations on vectors, and ‘UTC’ date and time functionality. It adds a few vector manipulation verbs to ‘ …

Pipeline for Topological Data Analysis (TDAstats)
A comprehensive toolset for any useR conducting topological data analysis, specifically via the calculation of persistent homology in a Vietoris-Rips c …

Fit GLM’s with High-Dimensional k-Way Fixed Effects (alpaca)
Provides a routine to concentrate out factors with many levels during the optimization of the log-likelihood function of the corresponding generalized …

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